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ecori digested pam2314 plasmid dna  (New England Biolabs)


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    Structured Review

    New England Biolabs ecori digested pam2314 plasmid dna
    Ecori Digested Pam2314 Plasmid Dna, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 15375 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ecori/EcoRI/pmc13125920-262-9-21
    Average 99 stars, based on 15375 article reviews
    ecori digested pam2314 plasmid dna - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Expressing:

    Article Title: EBF2 condensates enable adipose thermogenesis through ZFP423 sequestration and epigenetic remodeling.
    Article Snippet: For transient expression in U2OS cells, full-length mouse EBF2, as well as various truncation and point mutation constructs, were cloned into the LLP340 pEF1α-NLS-scFvGCN4-DNMT3a (mutant) backbone (Addgene plasmid #100944). .. For lentiviral expression, wild-type and mutant EBF2 sequences were subcloned into the pLenti-CMV-NeoR-IRES-ZsGreen1 vector, linearized with EcoRI (NEB, Cat# R3101S). .. All cloning procedures were performed using the ClonExpress® II One Step Cloning Kit (Vazyme, Cat# C112) according to the manufacturer’s instructions.

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: PCR products were digested with BamHI (NEB) and NotI (NEB) and ligated into the pCA24N backbone (Addgene, plasmid #87741) using T4 DNA ligase (NEB) with an N-terminal 6xHis under isopropyl β-D-1-thiogalactopyranoside (IPTG)-inducible expression. .. For expression of YfjO in E. coli , yfjO was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and XhoI (NEB), and cloned into a modified pET28a vector using T4 DNA ligase (NEB). .. For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus.

    Mutagenesis:

    Article Title: EBF2 condensates enable adipose thermogenesis through ZFP423 sequestration and epigenetic remodeling.
    Article Snippet: For transient expression in U2OS cells, full-length mouse EBF2, as well as various truncation and point mutation constructs, were cloned into the LLP340 pEF1α-NLS-scFvGCN4-DNMT3a (mutant) backbone (Addgene plasmid #100944). .. For lentiviral expression, wild-type and mutant EBF2 sequences were subcloned into the pLenti-CMV-NeoR-IRES-ZsGreen1 vector, linearized with EcoRI (NEB, Cat# R3101S). .. All cloning procedures were performed using the ClonExpress® II One Step Cloning Kit (Vazyme, Cat# C112) according to the manufacturer’s instructions.

    Plasmid Preparation:

    Article Title: Loss of Vpr-driven TRAIL-R2 expression protects HIV-infected cells from non-canonical NK cell TRAIL attack
    Article Snippet: HIV 89.6-ΔVpr was obtained from BEI Resources (Cat.#ARP-13403 - contributed by Dr. Kathleen Collins). .. To make HIV 89.6-ΔVif , the HIV 89.6 plasmid was double digested with ApaI (NEB, Cat.#R0114S) and EcoRI (NEB, Cat.#R0101S). ..

    Article Title: Structural divergence in N-terminal domains of AAA proteases paraplegin (SPG7) and FtsH indicates a key structural function in complex formation
    Article Snippet: PCR was performed using Taq DNA polymerase (Promega UK Ltd.), purified via gel electrophoresis (1% agarose gel), and the appropriate DNA bands excised and extracted using the gel extraction kit from Qiagen following the manufacturers protocol. .. After restriction digest of amplicon and pRSET_C vector using XhoI and EcoRI (New England Biolabs as per manufacturer’s protocol) the products of digestion were purified via gel electrophoresis and gel extraction. .. Digested PCR product and plasmid were ligated using T4 DNA ligase (NEB), as per manufacturers protocol), and the ligation mix was transformed into XL1 Blue cells (Stratagene).

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: PCR products were digested with BamHI (NEB) and NotI (NEB) and ligated into the pCA24N backbone (Addgene, plasmid #87741) using T4 DNA ligase (NEB) with an N-terminal 6xHis under isopropyl β-D-1-thiogalactopyranoside (IPTG)-inducible expression. .. For expression of YfjO in E. coli , yfjO was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and XhoI (NEB), and cloned into a modified pET28a vector using T4 DNA ligase (NEB). .. For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus.

    Amplification:

    Article Title: Structural divergence in N-terminal domains of AAA proteases paraplegin (SPG7) and FtsH indicates a key structural function in complex formation
    Article Snippet: PCR was performed using Taq DNA polymerase (Promega UK Ltd.), purified via gel electrophoresis (1% agarose gel), and the appropriate DNA bands excised and extracted using the gel extraction kit from Qiagen following the manufacturers protocol. .. After restriction digest of amplicon and pRSET_C vector using XhoI and EcoRI (New England Biolabs as per manufacturer’s protocol) the products of digestion were purified via gel electrophoresis and gel extraction. .. Digested PCR product and plasmid were ligated using T4 DNA ligase (NEB), as per manufacturers protocol), and the ligation mix was transformed into XL1 Blue cells (Stratagene).

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus. .. The yfjO coding sequence along with 250 bp flanking region (5’ and 3’) was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and PstI (NEB), and ligated into the pBS1C backbone with T4 DNA ligase (NEB). ..

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: PCR products were digested with BamHI (NEB) and NotI (NEB) and ligated into the pCA24N backbone (Addgene, plasmid #87741) using T4 DNA ligase (NEB) with an N-terminal 6xHis under isopropyl β-D-1-thiogalactopyranoside (IPTG)-inducible expression. .. For expression of YfjO in E. coli , yfjO was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and XhoI (NEB), and cloned into a modified pET28a vector using T4 DNA ligase (NEB). .. For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus.

    Purification:

    Article Title: Structural divergence in N-terminal domains of AAA proteases paraplegin (SPG7) and FtsH indicates a key structural function in complex formation
    Article Snippet: PCR was performed using Taq DNA polymerase (Promega UK Ltd.), purified via gel electrophoresis (1% agarose gel), and the appropriate DNA bands excised and extracted using the gel extraction kit from Qiagen following the manufacturers protocol. .. After restriction digest of amplicon and pRSET_C vector using XhoI and EcoRI (New England Biolabs as per manufacturer’s protocol) the products of digestion were purified via gel electrophoresis and gel extraction. .. Digested PCR product and plasmid were ligated using T4 DNA ligase (NEB), as per manufacturers protocol), and the ligation mix was transformed into XL1 Blue cells (Stratagene).

    Nucleic Acid Electrophoresis:

    Article Title: Structural divergence in N-terminal domains of AAA proteases paraplegin (SPG7) and FtsH indicates a key structural function in complex formation
    Article Snippet: PCR was performed using Taq DNA polymerase (Promega UK Ltd.), purified via gel electrophoresis (1% agarose gel), and the appropriate DNA bands excised and extracted using the gel extraction kit from Qiagen following the manufacturers protocol. .. After restriction digest of amplicon and pRSET_C vector using XhoI and EcoRI (New England Biolabs as per manufacturer’s protocol) the products of digestion were purified via gel electrophoresis and gel extraction. .. Digested PCR product and plasmid were ligated using T4 DNA ligase (NEB), as per manufacturers protocol), and the ligation mix was transformed into XL1 Blue cells (Stratagene).

    Gel Extraction:

    Article Title: Structural divergence in N-terminal domains of AAA proteases paraplegin (SPG7) and FtsH indicates a key structural function in complex formation
    Article Snippet: PCR was performed using Taq DNA polymerase (Promega UK Ltd.), purified via gel electrophoresis (1% agarose gel), and the appropriate DNA bands excised and extracted using the gel extraction kit from Qiagen following the manufacturers protocol. .. After restriction digest of amplicon and pRSET_C vector using XhoI and EcoRI (New England Biolabs as per manufacturer’s protocol) the products of digestion were purified via gel electrophoresis and gel extraction. .. Digested PCR product and plasmid were ligated using T4 DNA ligase (NEB), as per manufacturers protocol), and the ligation mix was transformed into XL1 Blue cells (Stratagene).

    Sequencing:

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus. .. The yfjO coding sequence along with 250 bp flanking region (5’ and 3’) was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and PstI (NEB), and ligated into the pBS1C backbone with T4 DNA ligase (NEB). ..

    Polymerase Chain Reaction:

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus. .. The yfjO coding sequence along with 250 bp flanking region (5’ and 3’) was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and PstI (NEB), and ligated into the pBS1C backbone with T4 DNA ligase (NEB). ..

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: PCR products were digested with BamHI (NEB) and NotI (NEB) and ligated into the pCA24N backbone (Addgene, plasmid #87741) using T4 DNA ligase (NEB) with an N-terminal 6xHis under isopropyl β-D-1-thiogalactopyranoside (IPTG)-inducible expression. .. For expression of YfjO in E. coli , yfjO was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and XhoI (NEB), and cloned into a modified pET28a vector using T4 DNA ligase (NEB). .. For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus.

    Clone Assay:

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: PCR products were digested with BamHI (NEB) and NotI (NEB) and ligated into the pCA24N backbone (Addgene, plasmid #87741) using T4 DNA ligase (NEB) with an N-terminal 6xHis under isopropyl β-D-1-thiogalactopyranoside (IPTG)-inducible expression. .. For expression of YfjO in E. coli , yfjO was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and XhoI (NEB), and cloned into a modified pET28a vector using T4 DNA ligase (NEB). .. For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus.

    Modification:

    Article Title: Activity-based profiling of bacterial RNA-modifying enzymes reveals species-specific 5-methyluridine modification in Bacillus subtilis 23S rRNA
    Article Snippet: PCR products were digested with BamHI (NEB) and NotI (NEB) and ligated into the pCA24N backbone (Addgene, plasmid #87741) using T4 DNA ligase (NEB) with an N-terminal 6xHis under isopropyl β-D-1-thiogalactopyranoside (IPTG)-inducible expression. .. For expression of YfjO in E. coli , yfjO was PCR amplified from B. subtilis WT 168 genomic DNA, digested with EcoRI (NEB) and XhoI (NEB), and cloned into a modified pET28a vector using T4 DNA ligase (NEB). .. For construction of B. subtilis add-back (Δ yfjO+yfjO + ) strain, yfjO was cloned into integrative plasmid pBS1C ( ) (Addgene, plasmid #55168) with two recombination sites for insertion at the amyE locus.



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